MRIQC: individual T1w report

Summary

  • BIDS filename: sub-4114_ses-1_T1w.
  • Date and time: 2022-10-31, 20:07.
  • MRIQC version: 0.16.1.
  • Workflow details:
    • Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)
Background noise

Other

cjv0.6335488774013379
cnr2.1622845998803584
efc0.6394159466338464
fber2656.74164365549
fwhmavg4.291933333333334
fwhmx4.18293
fwhmy4.78902
fwhmz3.90385
icvscsf0.1845521426955299
icvsgm0.4252514329497758
icvswm0.3901964243546943
inumed1.5447940826416016
inurange0.7791209220886226
qi10.0
qi20.0033483638344080063
rpvecsf23.563968980490188
rpvegm10.984442986209991
rpvewm14.229265080592057
sizex176
sizey256
sizez256
snrcsf2.6077710571100767
snrgm8.967757856606754
snrtotal10.6782492348837
snrwm20.459218790934266
snrdcsf36.24140128723526
snrdgm76.70173094185431
snrdtotal70.30027576319164
snrdwm97.95769506048534
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk8.759611474087606
summarybgmad6.687952208597747
summarybgmean15.144699036669111
summarybgmedian13.819275498390198
summarybgn2266824.0
summarybgp056.873836517333984
summarybgp9528.85579288005829
summarybgstdv7.632797432228705
summarycsfk29.50674410074575
summarycsfmad107.21955128069403
summarycsfmean401.8680696862487
summarycsfmedian369.96993005275726
summarycsfn21397.0
summarycsfp05248.31734418869019
summarycsfp95628.2543371915818
summarycsfstdv141.8687747046788
summarygmk-0.2684972777500101
summarygmmad91.82664540376271
summarygmmean792.281734095667
summarygmmedian783.0087420344353
summarygmn25734.0
summarygmp05664.8754172623158
summarygmp95948.3030295372009
summarygmstdv87.3120729730109
summarywmk0.4942393577832389
summarywmmad45.64792777296875
summarywmmean1001.1070840341016
summarywmmedian1000.0000083446503
summarywmn255527.0
summarywmp05922.5261425971985
summarywmp951083.989698290825
summarywmstdv48.877626356166026
tpmoverlapcsf0.16805456578731537
tpmoverlapgm0.4482932984828949
tpmoverlapwm0.4802132844924927
wm2max0.5233684715839705
AcquisitionMatrixPE256
AcquisitionNumber1
AcquisitionTime10:07:50.732500
BaseResolution256
BodyPartExaminedBRAIN
CoilCombinationMethodAdaptive Combine
ConsistencyInfoN4_VE11C_LATEST_20160120
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20220720
Dcm2bidsVersion2.1.7
DeviceSerialNumber67034
EchoTime0.00169
FlipAngle7
ImageOrientationPatientDICOM[-0.0302608, 0.990813, 0.131808, -0.0437103, 0.130431, -0.990493]
ImageOrientationTextSag>Tra(2.3)>Cor(-2.0)
ImageType['ORIGINAL', 'PRIMARY', 'M', 'ND', 'NORM']
ImagingFrequency123.258
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressFairbanks 710,Chicago ,Chicago,US,60611
InstitutionNameNU Tuna
InstitutionalDepartmentNameDepartment
InversionTime1.16
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNamePrisma_fit
MatrixCoilModeGRAPPA
ModalityMR
NonlinearGradientCorrectionTrue
ParallelReductionFactorInPlane2
PartialFourier0.75
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseEncodingSteps191
PhaseResolution1
PixelBandwidth650
ProcedureStepDescriptionfMRI_STUDIES^MITTAL
ProtocolNametfl_epinav_ME3_1mm_p2
PulseSequenceDetails%CustomerSeq%\tfl_mgh_epinav_ABCD
ReceiveCoilActiveElementsHC1-7;NC1,2
ReceiveCoilNameHeadNeck_64
ReconMatrixPE256
RefLinesPE36
RepetitionTime2.17
SAR0.0421745
ScanOptionsIR\PFP\WE
ScanningSequenceGR\IR
SequenceNametfl3d3_16ns
SequenceVariantSK\SP\MP
SeriesDescriptiontfl_epinav_ME3_1mm_p2
SeriesNumber112
ShimSetting[2602, 5454, -7521, 286, -92, -1023, 207, -162]
SliceThickness1
SoftwareVersionssyngo MR E11
SpoilingStateTrue
StationNameMRC35427
TxRefAmp243.415
WipMemBlockPrisma_epi_moco_navigator_ABCD_tfl.prot
md5sum7b50170a33811738036ded9c8ba5e941
softwaremriqc
version0.16.1
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.